FastQCFastQC Report
Thu 8 Feb 2018
YD12_k27me3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameYD12_k27me3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56572512
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGCCGG129500.012.2915721
TAGGCCG29400.010.3381821
TCCCGTT97100.09.5297251
TGGGCCG60550.09.518831
TGGGGTT334750.09.469781
TGGCGAA50800.09.3957171
TGGGGCG62550.09.1424831
AGGGTTT329300.08.9496421
TGGCCAG556300.08.85921
GGGGTTT373450.08.8375692
CCAACGA108050.08.7864789
AGGGGCG65700.08.7384131
AGGGCCG56900.08.5862841
TCCAACG110050.08.5859188
TAGCCGA21600.08.5470821
TGGGGGC239000.08.5346961
TAGCCAG381650.08.4535421
TGGCAAA334350.08.4037091
TGGCCGG99550.08.390551
TAGGGCG14100.08.3031331
Produced by FastQC (version 0.11.5)