Following is a list of 185 genes found to be hallmark of hypoxia according to MsigDB. The output contains numerous experiments related to hypoxic response.

Col5a1  Tgm2  Gpc1  Phkg1  Efna1  Ampd3  Tktl1  Pnrc1  Plaur  Glrx  Maff  Serpine1  Cited2  Gapdh  Errfi1  Ets1
Aldoa  Tmem45a  Pdk1  Pgam2  Atf3  Aldoc  Gcnt2  Pgf  Gpc4  Nr3c1  Fbp1  Pgm1  Igfbp3  Tpd52  Ppfia4  Prkcdbp  Ldha  Rbpj  Pkp1  Plac8
Dcn  Igfbp1  Cdkn1c  Slc37a4  Ppargc1a  Ugp2  Csrp2  Bhlhe40  Hmox1  Grhpr  Hk1  Jmjd6  Ndst2  Dpysl4  Hs3st1  Slc2a5  Tiparp  Siah2
P4ha2  Ptrf  Adm  Hspa5  Pfkp  Pfkfb3  Hk2  Sdc3  Gpc3  Eno2  Ddit4  Mxi1  Gys1  Cav1  Srpx  Plin2  Gbe1  Ier3  Slc6a6  Ankzf1  Aldob
Has1  Kdelr3  Anxa2  Bcan  Brs3  Btg1  Irs2  Selenbp1  Cxcr4  Klhl24  Cdkn1a  Sap30  Vhl  Mif  Dtna  Lox  Lxn  Cdkn1b  Map3k1  Ero1l
Myh9  Pdk3  S100a4  Cp  Casp6  Il6  Tnfaip3  Vldlr  Pam  Nedd4l  Adora2b  Cyr61  Noct  Bnip3l  Tpi1  Scarb1  Nagk  Tpbg  Isg20  Hoxb9
Pfkl  Zfp36  Ids  Klf6  Wsb1  Xpnpep1  Bcl2  Ddit3  Ldhc  Pck1  Ndst1  Ppp1r15a  B3galt6  Pgm2  Vegfa  Sult2b1  Stc1  Kif5a  Pgk1  Sdc2
Slc25a1  Rragd  Jun  Fos  Tgfb3  Ilvbl  Ctgf  Gapdhs  Ccng2  Dusp1  Tpst2  Lalba  Ncan  Ndrg1  Inha  F3  Akap12  Tes  Galk1  Pdgfb
Slc2a3  Fosl2  Hexa  Sdc4  Fam162a  Wisp2  Ak4  Chst3  Egfr  Eno1  Rora  Ppp1r3c  Efna3  Car12  Gck  Large  Nfil3  Tgfbi  Kdm3a  Edn2
Bgn  Pygm  Foxo3  Pklr  P4ha1  Gaa  Stbd1  Prkca  Hdlbp  Eno3